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bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
https://www.bacpop.org/poppunk
Apache License 2.0
90 stars 18 forks source link

Improve manual installation instruction #274

Closed HarryHung closed 1 year ago

HarryHung commented 1 year ago

Without

python3 setup.py build
python3 setup.py install

The wrapper script won't function properly, e.g.

Traceback (most recent call last):
  File "/lustre/scratch125/pam/teams/team284/ch31/poppunk_test/PopPUNK/poppunk_assign-runner.py", line 13, in <module>
    main()
  File "/lustre/scratch125/pam/teams/team284/ch31/poppunk_test/PopPUNK/PopPUNK/assign.py", line 151, in main
    from .sketchlib import checkSketchlibLibrary
  File "/lustre/scratch125/pam/teams/team284/ch31/poppunk_test/PopPUNK/PopPUNK/sketchlib.py", line 20, in <module>
    from .utils import readRfile, stderr_redirected
  File "/lustre/scratch125/pam/teams/team284/ch31/poppunk_test/PopPUNK/PopPUNK/utils.py", line 28, in <module>
    import poppunk_refine
ModuleNotFoundError: No module named 'poppunk_refine'