Update cluster assign to write qcreport on qc failiures

bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

https://www.bacpop.org/poppunk

Apache License 2.0

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Closed absternator closed 4 days ago

absternator commented 1 week ago

This PR writes qc failiures to qcreport.txt when running poppunk-assign.

Reasoning: Beebop needs these failures so better errors can be displayed to the users.