bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
https://www.bacpop.org/poppunk
Apache License 2.0
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Move call of sketchlibAssemblyQC in query assign #317

Closed absternator closed 1 month ago

absternator commented 1 month ago

This PR moves sketchlibAssemblyQC call from assign_query to after assign_query_hdf5 is called. This is so Beebop can utilise this function also and do quality check for the --length-range . If they fail qc it will be written to qcreport.txt.