search

bacpop / ggCaller

Bifrost graph gene caller.
MIT License
86 stars 6 forks source link

struggling to install #1

Closed samlipworth closed 1 year ago

samlipworth commented 1 year ago

Tried installing with Conda - everything seems to work but the I get an "Illegal instruction" error when I try to run.

Then tried installing from source - get an error about gcc version but I don't understand this because gcc --version gives 12.2.0

Very keen to try this out so would be grateful for your help.

Thanks.

samhorsfield96 commented 1 year ago

Hi Sam, I'm aware of this issue with the conda install. This is due to dependency issues in the conda recipe that aren't yet resolved, so installing from source is the best way forward at this time.

How did you install from source, and which operating system are you using? The best way is still using conda, setting up the conda environment using "environment_linux.yml". Unfortunately only linux is supported currently.

samlipworth commented 1 year ago

Yeh it was on an Ubuntu cluster - I think the issue is the GCC version but the version looks OK as above - anyway I'll try again on my local machine (also ubuntu) and let you know.

samlipworth commented 1 year ago

your tip to install gcc form conda worked, thanks! - https://anaconda.org/conda-forge/cxx-compiler