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bacpop / ggCaller

Bifrost graph gene caller.
MIT License
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Output gffs empty if input fasta has bases in lowercase #18

Closed rgladstone closed 8 months ago

rgladstone commented 8 months ago

6/66 assemblies had no genes annotated in the output gff and only the header and sequence-region. However, they had the expected number of genes in the gene presence-absence table.

These were the only 6 fastas where the sequence were in lower case.

samhorsfield96 commented 8 months ago

Thanks for troubleshooting this! This should be rectified in commit fe65d60.

samhorsfield96 commented 8 months ago

Closed as completed.