Closed tgttunstall closed 4 months ago
Hi, which version of pandas are you using? You can get this from running mamba list
.
Pandas 2.2.2
Hi, please try reinstalling with an earlier version of pandas using the command mamba install --force-reinstall pandas=2.0.0
and then re-run ggCaller as before.
same issue with pandas=2.0.0 The error message is the same.
$ conda list | grep pandas
pandas 2.0.0 py39h2ad29b5_0 conda-forge
Sorry, as you can see that I have used conda instead of mamba. Hopefully this should not be causing the issue.
I'm not able to reproduce unfortunately. Would you be able to remove the environment and attempt reinstalling from source again? If that fails I'd suggest trying the latest docker container (docker pull samhorsfield96/ggcaller:master
)
ok, so I think the issue was with conda version. I tried mamba, and it worked. From the mamba run, I extracted the following versions:
mamba 1.5.8
conda 24.3.0
The conda version on my local machine was 22.9.0 which gave the error I mention here. I am currently updating conda on my local machine and will attempt to rerun ggcaller. Hopefully it fixes the issue.
Closing as completed.
I encountered a
TypeError
when trying to runggCaller
from source following the example provided in the documentation. The error message indicates an issue with theset_axis
method from the pandas library.env: Python 3.9.19 on debian 11.9 x86_64