bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
56 stars 4 forks source link

Add more types of quality score filtering #16

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

Can now:

codecov[bot] commented 1 year ago

Codecov Report

Base: 82.53% // Head: 82.02% // Decreases project coverage by -0.52% :warning:

Coverage data is based on head (d777060) compared to base (bbc4f3d). Patch coverage: 79.36% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #16 +/- ## ========================================== - Coverage 82.53% 82.02% -0.52% ========================================== Files 15 15 Lines 1466 1513 +47 Branches 258 264 +6 ========================================== + Hits 1210 1241 +31 - Misses 102 108 +6 - Partials 154 164 +10 ``` | [Impacted Files](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/io\_utils.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2lvX3V0aWxzLnJz) | `84.61% <ø> (ø)` | | | [src/ska\_dict/split\_kmer.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0L3NwbGl0X2ttZXIucnM=) | `86.33% <58.82%> (-4.07%)` | :arrow_down: | | [src/ska\_dict.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0LnJz) | `86.15% <66.66%> (-2.91%)` | :arrow_down: | | [src/merge\_ska\_dict.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL21lcmdlX3NrYV9kaWN0LnJz) | `77.56% <75.00%> (-0.07%)` | :arrow_down: | | [src/cli.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NsaS5ycw==) | `68.65% <81.25%> (+0.88%)` | :arrow_up: | | [src/lib.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2xpYi5ycw==) | `73.11% <100.00%> (-0.12%)` | :arrow_down: | | [src/ska\_ref.rs](https://codecov.io/gh/bacpop/ska.rust/pull/16?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYucnM=) | `85.79% <100.00%> (+0.43%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop)

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