bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
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Add 'reverse' weed to keep only selected split k-mers #24

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

Can be useful for e.g. keeping only the core genome

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 68.00% and project coverage change: -0.32 :warning:

Comparison is base (893a674) 82.43% compared to head (935ebfb) 82.11%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #24 +/- ## ========================================== - Coverage 82.43% 82.11% -0.32% ========================================== Files 15 15 Lines 1554 1571 +17 Branches 273 277 +4 ========================================== + Hits 1281 1290 +9 - Misses 107 108 +1 - Partials 166 173 +7 ``` | [Impacted Files](https://codecov.io/gh/bacpop/ska.rust/pull/24?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/generic\_modes.rs](https://codecov.io/gh/bacpop/ska.rust/pull/24?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2dlbmVyaWNfbW9kZXMucnM=) | `69.23% <25.00%> (-2.20%)` | :arrow_down: | | [src/merge\_ska\_array.rs](https://codecov.io/gh/bacpop/ska.rust/pull/24?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL21lcmdlX3NrYV9hcnJheS5ycw==) | `90.33% <50.00%> (-0.76%)` | :arrow_down: | | [src/cli.rs](https://codecov.io/gh/bacpop/ska.rust/pull/24?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NsaS5ycw==) | `67.93% <66.66%> (-0.03%)` | :arrow_down: | | [src/lib.rs](https://codecov.io/gh/bacpop/ska.rust/pull/24?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2xpYi5ycw==) | `73.02% <100.00%> (-0.04%)` | :arrow_down: | ... and [1 file with indirect coverage changes](https://codecov.io/gh/bacpop/ska.rust/pull/24/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop)

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