bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
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Consider palindromic self-rc k-mers #27

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

As reported by @nickjcroucher. We can't determine the direction so the middle base may be reverse complemented. Might actually be best to put as ambiguous if own RC present.

e.g. GTGGAAG[X]CTTCCAC seaview

So here we would store a W as the middle base