bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
56 stars 4 forks source link

Deal with palindromes #30

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

i.e. own self-rc k-mers

Closes #27

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 74.00% and project coverage change: +0.47 :tada:

Comparison is base (d9beb84) 82.11% compared to head (20eac85) 82.59%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #30 +/- ## ========================================== + Coverage 82.11% 82.59% +0.47% ========================================== Files 15 15 Lines 1571 1643 +72 Branches 277 289 +12 ========================================== + Hits 1290 1357 +67 + Misses 108 104 -4 - Partials 173 182 +9 ``` | [Impacted Files](https://app.codecov.io/gh/bacpop/ska.rust/pull/30?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/ska\_dict/split\_kmer.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/30?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0L3NwbGl0X2ttZXIucnM=) | `85.81% <66.66%> (-0.32%)` | :arrow_down: | | [src/ska\_dict.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/30?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0LnJz) | `82.64% <73.91%> (-4.32%)` | :arrow_down: | | [src/ska\_dict/count\_min\_filter.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/30?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0L2NvdW50X21pbl9maWx0ZXIucnM=) | `97.05% <100.00%> (+13.23%)` | :arrow_up: | ... and [7 files with indirect coverage changes](https://app.codecov.io/gh/bacpop/ska.rust/pull/30/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop)

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