bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
70 stars 4 forks source link

Add mode to automatically determine a count cutoff #34

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

Closes #29

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 79.62% and project coverage change: -1.80 :warning:

Comparison is base (91d1a61) 82.69% compared to head (899e5fd) 80.90%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #34 +/- ## ========================================== - Coverage 82.69% 80.90% -1.80% ========================================== Files 15 16 +1 Lines 1647 1922 +275 Branches 288 355 +67 ========================================== + Hits 1362 1555 +193 - Misses 104 142 +38 - Partials 181 225 +44 ``` | [Impacted Files](https://app.codecov.io/gh/bacpop/ska.rust/pull/34?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/cli.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/34?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NsaS5ycw==) | `67.37% <60.00%> (-0.57%)` | :arrow_down: | | [src/coverage.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/34?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NvdmVyYWdlLnJz) | `79.78% <79.78%> (ø)` | | | [src/lib.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/34?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2xpYi5ycw==) | `67.89% <88.23%> (-5.05%)` | :arrow_down: | | [src/ska\_dict.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/34?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9kaWN0LnJz) | `82.64% <100.00%> (ø)` | |

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