bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
56 stars 4 forks source link

Mask repeats with Ns during ska map #37

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

TODO:

Closes #32

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 98.38% and project coverage change: +0.10 :tada:

Comparison is base (935b529) 92.56% compared to head (09cbd48) 92.66%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #37 +/- ## ========================================== + Coverage 92.56% 92.66% +0.10% ========================================== Files 16 16 Lines 2084 2140 +56 ========================================== + Hits 1929 1983 +54 - Misses 155 157 +2 ``` | [Impacted Files](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/merge\_ska\_array.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL21lcmdlX3NrYV9hcnJheS5ycw==) | `98.79% <ø> (ø)` | | | [src/cli.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NsaS5ycw==) | `74.52% <66.66%> (-0.16%)` | :arrow_down: | | [src/generic\_modes.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2dlbmVyaWNfbW9kZXMucnM=) | `100.00% <100.00%> (ø)` | | | [src/lib.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2xpYi5ycw==) | `82.26% <100.00%> (+0.18%)` | :arrow_up: | | [src/ska\_ref.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYucnM=) | `96.20% <100.00%> (+0.85%)` | :arrow_up: | | [src/ska\_ref/aln\_writer.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/37?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYvYWxuX3dyaXRlci5ycw==) | `100.00% <100.00%> (ø)` | |

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