bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
70 stars 4 forks source link

Enchanced filtering options #44

Closed johnlees closed 1 year ago

johnlees commented 1 year ago

Closes #43, closes #42

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 95.50% and project coverage change: -0.08 :warning:

Comparison is base (d54ac01) 92.64% compared to head (3a3f48d) 92.56%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #44 +/- ## ========================================== - Coverage 92.64% 92.56% -0.08% ========================================== Files 16 16 Lines 2147 2206 +59 ========================================== + Hits 1989 2042 +53 - Misses 158 164 +6 ``` | [Impacted Files](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/cli.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2NsaS5ycw==) | `74.40% <75.00%> (-0.12%)` | :arrow_down: | | [src/lib.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2xpYi5ycw==) | `81.79% <95.65%> (-0.28%)` | :arrow_down: | | [src/generic\_modes.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2dlbmVyaWNfbW9kZXMucnM=) | `100.00% <100.00%> (ø)` | | | [src/io\_utils.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL2lvX3V0aWxzLnJz) | `96.77% <100.00%> (+0.47%)` | :arrow_up: | | [src/merge\_ska\_array.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL21lcmdlX3NrYV9hcnJheS5ycw==) | `98.88% <100.00%> (+0.06%)` | :arrow_up: | | [src/merge\_ska\_dict.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL21lcmdlX3NrYV9kaWN0LnJz) | `94.19% <100.00%> (+0.07%)` | :arrow_up: | | [src/ska\_ref.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYucnM=) | `96.27% <100.00%> (+0.07%)` | :arrow_up: | | [src/ska\_ref/aln\_writer.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYvYWxuX3dyaXRlci5ycw==) | `100.00% <100.00%> (ø)` | |

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