bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
56 stars 4 forks source link

Fix for multi-contig references in map #60

Closed johnlees closed 8 months ago

johnlees commented 8 months ago

Short contigs may be skipped entirely due to no matches, so need to keep advancing writer

Closes #59

codecov[bot] commented 8 months ago

Codecov Report

All modified lines are covered by tests :white_check_mark:

Comparison is base (dd2c90a) 92.50% compared to head (e285a89) 92.50%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #60 +/- ## ========================================== - Coverage 92.50% 92.50% -0.01% ========================================== Files 16 16 Lines 2176 2175 -1 ========================================== - Hits 2013 2012 -1 Misses 163 163 ``` | [Files](https://app.codecov.io/gh/bacpop/ska.rust/pull/60?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop) | Coverage Δ | | |---|---|---| | [src/ska\_ref/aln\_writer.rs](https://app.codecov.io/gh/bacpop/ska.rust/pull/60?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop#diff-c3JjL3NrYV9yZWYvYWxuX3dyaXRlci5ycw==) | `100.00% <100.00%> (ø)` | | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/bacpop/ska.rust/pull/60/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bacpop)

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.