search

bacpop / ska.rust

Split k-mer analysis – version 2
https://docs.rs/ska/latest/ska/
Apache License 2.0
56 stars 4 forks source link

Filter tweaks #63

Closed johnlees closed 7 months ago

johnlees commented 7 months ago

Changes the default min-count to 5, which works better with a default of strict

Adds the --filter_ambig_as_missing option to align and weed, which alters the min count threshold

Closes #62

codecov[bot] commented 7 months ago

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (798c290) 92.65% compared to head (9e55002) 92.50%.

Files Patch % Lines
src/cli.rs 71.42% 2 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #63 +/- ## ========================================== - Coverage 92.65% 92.50% -0.16% ========================================== Files 16 16 Lines 2232 2267 +35 ========================================== + Hits 2068 2097 +29 - Misses 164 170 +6 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.