Open IdoBar opened 1 year ago
Hi,
When using the --out flag with the --write-graph flag, the resulting graph and colour files do not inherit the output prefix as expected but rather take it from the input reads/refs.txt file. For example, when running the following command:
--out
--write-graph
reads/refs.txt
unitig-caller --call --refs refs.txt --out Arab_ME14 --pyseer --threads 8 --write-graph
I'm getting the following files:
Arab_ME14.pyseer refs.color.bfg refs.gfa
The value provided to the --out flag should be forwarded to Bifrost (as the -o flag).
-o
Hi,
When using the
--outflag with the--write-graphflag, the resulting graph and colour files do not inherit the output prefix as expected but rather take it from the inputreads/refs.txtfile. For example, when running the following command:I'm getting the following files:
The value provided to the
--outflag should be forwarded to Bifrost (as the-oflag).