search

bacpop / unitig-caller

Methods to determine sequence element (unitig) presence/absence
Apache License 2.0
18 stars 3 forks source link

ImportError #26

Open DorothyTamYiLing opened 1 year ago

DorothyTamYiLing commented 1 year ago

Hi,

I have an error after installing using the following command: conda create --name unitig-caller unitig-caller

(unitig-caller) tyl205@nimbus-1-login-1 /campaign/AB-BB0112-002 $ unitig-caller -h Traceback (most recent call last): File "/shared/home/tyl205/miniconda3/envs/unitig-caller/bin/unitig-caller", line 7, in from unitig_caller.main import main File "/shared/home/tyl205/miniconda3/envs/unitig-caller/lib/python3.10/site-packages/unitig_caller/main.py", line 11, in import unitig_query ImportError: /shared/home/tyl205/miniconda3/envs/unitig-caller/lib/python3.10/site-packages/unitig_query.cpython-310-x86_64-linux-gnu.so: undefined symbol: _ZN18BlockedBloomFilter15ReadBloomFilterEP8_IO_FILE

It is similar error to issue 20 (it is now closed), however it is not very clear to me in the comments what I should do to solve the issue. How do I pin the Bifrost version during installation?

Thanks, Dorothy

samhorsfield96 commented 1 year ago

Hi Dorothy, which version of Bifrost is installed in the unitig-caller conda environment?

samhorsfield96 commented 11 months ago

Hi Dorothy, I believe issue #28 describes a similar problem. There is a new build of unitig-caller that should be available on bioconda soon. Please give this a try and let us know if the issue persists.