Problem: Current implementation of unitig-caller requires prior counting of unitigs using separate tool prior to querying for presence/absence in a DBG.
Key Features:
Implements BiFrost using python-wrapped command line calls for building and querying of de Bruijn graphs.
Build mode: generates de Bruijn graph using list of reference genomes and/or read files.
Query mode: queries composite unitigs or unitigs passed in .fasta within a coloured DBG for presence/absence in source genomes used to build DBG.
Problem: Current implementation of unitig-caller requires prior counting of unitigs using separate tool prior to querying for presence/absence in a DBG.
Key Features: