Dev fastp

[chrisgulvik]

PR checklist

• [ ] This comment contains a description of changes (with reason).
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• [ ] Make sure your code lints (nf-core lint).
• [ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <outdir>).
• [ ] Usage Documentation in docs/usage.md is updated.
• [ ] Output Documentation in docs/output.md is updated.
• [ ] CHANGELOG.md is updated.
• [ ] README.md is updated (including new tool citations and authors/contributors).

[github-actions[bot]]

🦙 MegaLinter status: ⚠️ WARNING

Descriptor	Linter	Files	Fixed	Errors	Elapsed time
✅ BASH	bash-exec	2		0	0.01s
⚠️ BASH	shellcheck	2		7	0.08s
✅ BASH	shfmt	2	2	0	0.2s
✅ EDITORCONFIG	editorconfig-checker	156		0	0.4s
✅ JSON	eslint-plugin-jsonc	2	0	0	5.19s
✅ JSON	jsonlint	2		0	0.21s
✅ JSON	prettier	2	1	0	0.52s
✅ MARKDOWN	markdownlint	24	2	0	2.38s
✅ MARKDOWN	markdown-link-check	25		0	34.1s
✅ MARKDOWN	markdown-table-formatter	25	4	0	0.53s
✅ PYTHON	ruff	4	1	0	0.19s
✅ REPOSITORY	gitleaks	yes		no	0.69s
✅ REPOSITORY	git_diff	yes		no	0.17s
✅ REPOSITORY	secretlint	yes		no	2.59s
✅ YAML	prettier	7	0	0	1.01s

See detailed report in MegaLinter reports

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