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bagherilab / SWING

Sliding Window Inference for Network Generation
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Update requirements #2

Closed justinfinkle closed 6 years ago

justinfinkle commented 6 years ago

We should distinguish between required and suggested

jiawu commented 6 years ago

suggested: networkx

jiawu commented 6 years ago

we need to decide if requirements.txt should only contain required or suggested? is anaconda a required install?

jiawu commented 6 years ago

minimum package list (with conda) to run the run_swing.py file:


mkl                       2017.0.3                      0
numpy                     1.13.1                   py36_0
openssl                   1.0.2l                        0
pandas                    0.20.3                   py36_0
pip                       9.0.1                    py36_1
python                    3.6.2                         0
python-dateutil           2.6.1                    py36_0
pytz                      2017.2                   py36_0
readline                  6.2                           2
scikit-learn              0.19.0              np113py36_0
scipy                     0.19.1              np113py36_0
setuptools                36.4.0                   py36_1
six                       1.10.0                   py36_0
sqlite                    3.13.0                        0
tk                        8.5.18                        0
wheel                     0.29.0                   py36_0
xz                        5.2.3                         0
zlib                      1.2.11                        0