CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
README - update to include pain imaging book chapter information.
initializeObj - Ensure all save paths (pics, data, log, settings, video, etc.) use absolute CIAtah private directory to match CIAtah default properties initialization and to avoid instances where users have non-CIAtah root path working directory.
downloadCnmfGithubRepositories - Download CVX from a custom URL since the main URL sometimes has a long response time, leading to timeouts.
modelExtractSignalsFromMovie - matlab.desktop.editor.openDocument no longer uses pwd since options.settingsPrivateSaveFolder is based on an absolute path.
modelSaveMatchObjBtwnTrials - Remove user selecting folder to save structure to and add additional instructions.
README
- update to include pain imaging book chapter information.initializeObj
- Ensure all save paths (pics, data, log, settings, video, etc.) use absolute CIAtah private directory to match CIAtah default properties initialization and to avoid instances where users have non-CIAtah root path working directory.downloadCnmfGithubRepositories
- Download CVX from a custom URL since the main URL sometimes has a long response time, leading to timeouts.modelExtractSignalsFromMovie
- matlab.desktop.editor.openDocument no longer uses pwd since options.settingsPrivateSaveFolder is based on an absolute path.modelSaveMatchObjBtwnTrials
- Remove user selecting folder to save structure to and add additional instructions.