Java heap space check and signalSorter/playMovie/viewMovieRegistrationTest updates

bahanonu / ciatah

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

https://git.io/ciatah_docs

MIT License

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Java heap space check and signalSorter/playMovie/viewMovieRegistrationTest updates #30

Closed bahanonu closed 4 years ago

bahanonu commented 5 years ago

Check on initializing calciumImagingAnalysis class that Java heap space memory is large enough.
viewMovie and viewMovieRegistrationTest now fallback to playMovie if Miji encounters errors (e.g. Java memory).
playMovie and signalSorter now have GUIs for adjusting contrast of movies in addition to manually entering the min/max display values.

bahanonu commented 4 years ago

Merging.

Tested in MATLAB 2018b on Windows 8 using three new example imaging sessions.

Cross-session with computeMatchObjBtwnTrials
Cell maps and activity traces after full pipeline and PCA-ICA.