CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
signalSorter updated to allow user to select specific cell on cellmap and jump to that cell by clicking cellmap window or pressing V in the interface. There is also an option to switch back to the most recently sorted cell by pressing Y.
signalSorter - Added in ability to user to click on the cellmap to go to that cell. Users can now also go the most recently sorted cell for convenience.
signalSorter - Mouse is no longer invisible on the figure, callback to detect mouse click on cellmaps and trigger ability for user to select cells, and other improvements.
signalSorter - Remove many commented out code. And added removal of unconnected components from main component when thresholding images.
`manageParallelWorkers Added ability to disable automatic loading of parallel pool when parfor is called combined with option for user to disable loading of parallel pool.
`manageParallelWorkers Added check for user setting to auto-load parallel pool, if they have disabled then do not load pool using manageParallelWorkers.
modelModifyMovies - Cast the movie mask to be same type as the movie to deal with integer movie inputs.
calciumImagingAnalysis - Improved checking for directories that should not be loaded, remove need for verLessThan('matlab','9.0') check.
modelExtractSignalsFromMovie- Added a check to make sure that filenames produced are valid MATLAB ones for settings, e.g. for CNMF-e.
computeManualSortSignals - ROI manual sorting support for when that is needed.
viewCellExtractionOnMovie - Added a check for already loaded files.
matchObjBtwnTrials - support for ndSparse matrix inputs.
downloadMiji - improved download reliability.
createPeakTriggeredImages, normalizeMovie, computeSignalPeaks - Added support for parallel.pool.Constant when PCT auto-start parallel pool disabled.
manageParallelWorkers - Added ability to disable automatic loading of parallel pool when parfor is called combined with option for user to disable loading of parallel pool. Added check for user setting to auto-load parallel pool, if they have disabled then do not load pool using manageParallelWorkers.
loadBatchFxns - Improved checking for directories that should not be loaded, remove need for verLessThan('matlab','9.0') check.
ginputCustom - added custom ginput function to make display more clear.
Misc. other changes.
signalSorter
Click the cell map window or press V and a orange cross hair will appear, this will take the user to the clicked upon cell.
Or select the full cellmap, will obtain the same result.
This cell can be viewed like normal.
Users can then press Y to take them back to the last sorted cell (here #2). This function works even with the G go to new signal via index number command.
signalSorter
updated to allow user to select specific cell on cellmap and jump to that cell by clicking cellmap window or pressingV
in the interface. There is also an option to switch back to the most recently sorted cell by pressingY
.signalSorter
- Added in ability to user to click on the cellmap to go to that cell. Users can now also go the most recently sorted cell for convenience.signalSorter
- Mouse is no longer invisible on the figure, callback to detect mouse click on cellmaps and trigger ability for user to select cells, and other improvements.signalSorter
- Remove many commented out code. And added removal of unconnected components from main component when thresholding images.modelModifyMovies
- Cast the movie mask to be same type as the movie to deal with integer movie inputs.calciumImagingAnalysis
- Improved checking for directories that should not be loaded, remove need for verLessThan('matlab','9.0') check.modelExtractSignalsFromMovie
- Added a check to make sure that filenames produced are valid MATLAB ones for settings, e.g. for CNMF-e.computeManualSortSignals
- ROI manual sorting support for when that is needed.viewCellExtractionOnMovie
- Added a check for already loaded files.matchObjBtwnTrials
- support for ndSparse matrix inputs.downloadMiji
- improved download reliability.createPeakTriggeredImages
,normalizeMovie
,computeSignalPeaks
- Added support for parallel.pool.Constant when PCT auto-start parallel pool disabled.manageParallelWorkers
- Added ability to disable automatic loading of parallel pool when parfor is called combined with option for user to disable loading of parallel pool. Added check for user setting to auto-load parallel pool, if they have disabled then do not load pool using manageParallelWorkers.modelAddOutsideDependencies
- improved OSX support.loadBatchFxns
- Improved checking for directories that should not be loaded, remove need for verLessThan('matlab','9.0') check.ginputCustom
- added custom ginput function to make display more clear.signalSorter
V
and a orange cross hair will appear, this will take the user to the clicked upon cell.Y
to take them back to the last sorted cell (here #2). This function works even with theG
go to new signal via index number command.