CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
ciapkg.version - moved version checking to a function to allow more flexibility going forward.
ciapkg.io.dependencyCheck - new function to allow checking of both whether a toolbox has a license and is installed, for cases in which license exists but user has not installed the toolbox.
loadDependencies, downloadCnmfGithubRepositories, and downloadGithubRepositories - updated to allow forced updating of GitHub repositories even if already downloaded.
ciapkg.download.updatePathCleanup - clean up functions, Java, etc. in memory to allow updating of GitHub repo dependencies.
ciapkg.version
- moved version checking to a function to allow more flexibility going forward.ciapkg.io.dependencyCheck
- new function to allow checking of both whether a toolbox has a license and is installed, for cases in which license exists but user has not installed the toolbox.loadDependencies
,downloadCnmfGithubRepositories
, anddownloadGithubRepositories
- updated to allow forced updating of GitHub repositories even if already downloaded.ciapkg.download.updatePathCleanup
- clean up functions, Java, etc. in memory to allow updating of GitHub repo dependencies.playMovie
- support for sparse movies.