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bahanonu / ciatah

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
https://git.io/ciatah_docs
MIT License
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No movie found matching manualCut #50

Open Hanbing1999 opened 4 years ago

Hanbing1999 commented 4 years ago

Hi, When testing the signal extraction on concat_recording_20140401_180333.h5, it is reported that image Could you please help me with it?

bahanonu commented 4 years ago

@Hanbing1999 Hi, could you provide the list of files in that directory and what you run before the cell extraction step?

If https://github.com/bahanonu/calciumImagingAnalysis#manual-movie-cropping-with-modelmodifymovies has not been run after preprocessing the movie, then likely the pre-processed movie for cell extraction can be found using "crop" regular expression (or if no pre-processing has been run, use "concat"), e.g. change by running obj.fileFilterRegexp = 'crop'; or run:

obj.setMovieInfo;

and change

image

to

image

bahanonu commented 3 years ago

@Hanbing1999 Were you able to solve this issue?