Save settings to processed HDF5, adding docs, and misc updates

bahanonu / ciatah

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

https://git.io/ciatah_docs

MIT License

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Save settings to processed HDF5, adding docs, and misc updates #51

Closed bahanonu closed 4 years ago

bahanonu commented 4 years ago

modelPreprocessMovieFunction - Further upgraded adding json to HDF5 directly for later reading out to get settings.
modelSaveMatchObjBtwnTrials - Allow users to export output from computeMatchObjBtwnTrials.
getOptions - Support case where calling getOptions from command line or where there is no stack.
loadMovieList - added support for taking specific channel from RGB AVI.
The full docs have been added under /docs folder.
Misc other changes.

bahanonu commented 4 years ago

Tested pipeline in MATLAB 2019b on Windows 10. Merging.