CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
ciapkg.signal_extraction.computeSignalsFromImages: CIAtah package wrapper for applyImagesToMovie.
@ciatah: added the ciatah alias for calciumImagingAnalysis class.
Updated
getRegistrationSettings: Add support for user canceling the input. Added support for calculating dropped frames if entire frame of a movie is a set value.
modelPreprocessMovieFunction: Added support for calculating dropped frames if entire frame of a movie is a set value. Changed order so that dropped frames calculated before dF/F.
viewMovie: Added support for viewing movies from disk.
applyImagesToMovie - Finished updating to allow read from disk and binning. Added support for weighted computation of signals based on pixel values in each image.
NEW
ciapkg.signal_extraction.computeSignalsFromImages
: CIAtah package wrapper for applyImagesToMovie.@ciatah
: added theciatah
alias forcalciumImagingAnalysis
class.Updated
getRegistrationSettings
: Add support for user canceling the input. Added support for calculating dropped frames if entire frame of a movie is a set value.modelPreprocessMovieFunction
: Added support for calculating dropped frames if entire frame of a movie is a set value. Changed order so that dropped frames calculated before dF/F.viewMovie
: Added support for viewing movies from disk.applyImagesToMovie
- Finished updating to allow read from disk and binning. Added support for weighted computation of signals based on pixel values in each image.