Closed cyriltata closed 2 years ago
It's probably because the version of ensemble-vep installed in docker container is 104, and is not compatible with future database versions. The easiest solution would be for you to download vep cache GRCh38 version 104 from http://ftp.ensembl.org/pub/release-104/variation/indexed_vep_cache/homo_sapiens_vep_104_GRCh38.tar.gz, see https://ensembl.org/info/docs/tools/vep/script/vep_cache.html
@jemunro downgraded the database and it worked
Where can one change the ensembl api version? I get this error because my DB is 106. Tried on this line https://github.com/bahlolab/PLASTER/blob/master/test/typing.config#L7 with no success