I am using a GATK-derived VCF file to calculate Fws on some samples. I have 2 files generated in the same way and when I use 1 file, the program is able to calculate Fws, but for the other I get the following error:
Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) :
0 (non-NA) cases
Additionally, when I tried merging the two files with bcftools merge, I get the above error even though one of the files was running through getFws just fine before the merge.
Hi,
I am using a GATK-derived VCF file to calculate Fws on some samples. I have 2 files generated in the same way and when I use 1 file, the program is able to calculate Fws, but for the other I get the following error:
Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 0 (non-NA) cases
Additionally, when I tried merging the two files with bcftools merge, I get the above error even though one of the files was running through getFws just fine before the merge.
Thanks for your help!