bahlolab superSTR issues

bahlolab / superSTR

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.

GNU General Public License v2.0

17 stars 7 forks source link

issues

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[Snyk] Security upgrade debian from 11 to bookworm-20240701

#25 lfearnley closed 3 months ago
0
superstr-screen.py does not complete

#24 jay-ross opened 8 months ago
2
Dockerfile has been updated

#23 koustav-pal opened 10 months ago
2
Unexpected return code of 0 while erroring

#22 wdecoster opened 1 year ago
4
stack smashing detected

#21 wdecoster closed 1 year ago
4
superstr taking ~6 hours to process a 80GB BAM file

#20 chrisclarkson opened 1 year ago
3
scikit-learn version missing in environment.yml

#19 mp8 opened 1 year ago
0
Fixed htslib documentation link in PROCESSING.md

#18 DylanSteinecke closed 10 months ago
0
Update EXAMPLE.md

#17 DylanSteinecke closed 10 months ago
0
No such file or directory in outlier detection

#16 christopher-schroeder opened 2 years ago
1
Absolute path in multiparse fix

#15 christopher-schroeder opened 2 years ago
1
Bioconda installation

#14 christopher-schroeder closed 2 years ago
1
shebang on outlier

#13 christopher-schroeder closed 2 years ago
1
Version

#12 christopher-schroeder closed 2 years ago
2
Outlier detection analysis - empty output

#11 gspirito opened 2 years ago
5
Preprocessing warning message

#10 gspirito opened 2 years ago
4
Removed duplicate vdb-config from Dockerfile

#9 lfearnley closed 3 years ago
0
Improve HTSlib finding

#8 jbedo closed 3 years ago
0
RuntimeError in outliers.py

#7 wdecoster closed 3 years ago
5
[Snyk] Security upgrade debian from latest to 11

#6 snyk-bot closed 3 years ago
0
ERROR: Output file output_dir/ does not appear to exist.

#5 wdecoster opened 3 years ago
1
fatal error: kseq.h: No such file or directory

#4 hchetia closed 3 years ago
2
help with post-processing issue

#3 fjmuzengyiheng closed 3 years ago
6
superSTR - postprocessing flags

#2 lfearnley closed 3 years ago
1
superSTR - C non-standard usage documentation

#1 lfearnley opened 4 years ago
0