JeffAndBailey
commented
2 years ago Aris,
how do you want us to mark this up?
Jeff
On 11/11/21 21:04, Aris Paschalidis wrote:
It would be helpful for users if we could provide a list of all the files that MIPTools generated and a brief description of each one. There are many files generated so it can be confusing navigating them and determining which one will best serve your downstream analysis needs. Although depending on how you use MIPTools, different files may be generated, it would be ideal to have a "master list" of all files.
List of Files(Generated from two recent runs)
- aligned_haplotypes.csv
- all_barcode_counts.csv
- all_haplotypes.csv
- alternate_AA_table.csv --> agrregated_AA_alt_cnt.csv
- alternate_AN_table.csv --> agrregated_AA_alt_cnt.csv
- alternate_table.csv
- barcode_counts.csv
- coverage_AA_table.csv --> aggregate_AminoAcid_coverage_table.csv
- coverage_AN_table.csv --> aggregate_Nucelotide_coverage_table.csv
- coverage_table.csv
- genotypes_AAtable.csv --> aggregate
- genotypes_AN_table.csv
- genotypes_table.csv
- haplotype_counts.csv
- mapped_haplotypes.csv
- offtarget_haplotypes.csv
- reference_AA_table.csv
- reference_AN_table.csv
- reference_table.csv
- repool.csv --> repool document
- run_meta.csv
- sample_summary.csv
- unique_haplotypes.csv
Please add any files I have missed!
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arisp99
It would be helpful for users if we could provide a list of all the files that MIPTools generated and a brief description of each one. There are many files generated so it can be confusing navigating them and determining which one will best serve your downstream analysis needs. Although depending on how you use MIPTools, different files may be generated, it would be ideal to have a "master list" of all files.
List of Files
(Generated from two recent runs)
Please add any files I have missed!