arisp99
commented
2 years ago Below we provide a comparison of the output directory file structure. The file structure is almost identical with the only differences being a nohop.out file with download progress and a .json file with metadata about the sequencing run. These differences will not make a difference in subsequent steps such as demultiplexing.
Superseded app:
new_download_app
└── 214264108
├── 210923_214264108.json
├── Config
├── Data
├── InstrumentAnalyticsLogs
├── InterOp
├── Logs
├── Recipe
├── RTAComplete.txt
├── RTAConfiguration.xml
├── RTALogs
├── RTARead1Complete.txt
├── RTARead2Complete.txt
├── RTARead3Complete.txt
├── RTARead4Complete.txt
├── RunCompletionStatus.xml
├── RunInfo.xml
├── RunParameters.xml
└── SampleSheet.csv
8 directories, 11 filesNew download app:
superseded_download_app
├── 214264108
│ ├── Config
│ ├── Data
│ ├── InstrumentAnalyticsLogs
│ ├── InterOp
│ ├── Logs
│ ├── Recipe
│ ├── RTAComplete.txt
│ ├── RTAConfiguration.xml
│ ├── RTALogs
│ ├── RTARead1Complete.txt
│ ├── RTARead2Complete.txt
│ ├── RTARead3Complete.txt
│ ├── RTARead4Complete.txt
│ ├── RunCompletionStatus.xml
│ ├── RunInfo.xml
│ ├── RunParameters.xml
│ └── SampleSheet.csv
└── nohup.out
8 directories, 11 files
This PR creates a new basespace download app that uses the official basespace CLI. This PR supersedes the work in #13 and introduces one large change. Namely, in order to maintain backward compatibility, we supersede the original download app that uses a python script for downloading data. Users may, therefore, still use the old download app.
Closes #8.