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baiwenjia / ukbb_cardiac

Some code for processing and analysing UK Biobank cardiac MR images.
Apache License 2.0
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argparse issue for tensorflow 1.6.0 and anaconda python 3.6.3 on Mac OSX 10.13.3 #1

Closed baiwenjia closed 5 years ago

baiwenjia commented 6 years ago

Thanks a lot to Dr Sean Coffey, who has pointed out there might be issue with the module argparse if you run the code deploy_network.py on Mac OSX. He suggested a fix by adding these lines in the beginning of deploy_network.py:

import argparse tf.app.flags._global_parser = argparse.ArgumentParser() tf.app.flags.DEFINE_string('seq_name', 'sa', 'name of sequence')

Then the code works.

asciidiego commented 5 years ago

I had the same error on Ubuntu 18.04, the fix worked. I guess you can close this issue :)

Thanks Dr. Coffey!