Open jjv5 opened 4 months ago
In rf2aa/preprocessing.py the path to the make_msa.sh command is prefaced with a "./" :
search_command = f"./{command} {fasta_file} {out_dir} {num_cpus} {ram_gb} {search_base} {template_database}"
this seems to mean jobs can only be run from the RosettaFoldAA directory (where make_msa.sh lives). We are unable to override this path in the base.yaml file because of the prepended cwd.
Can the leading ./ be removed?
File is rf2aa/data/preprocessing.py
In rf2aa/preprocessing.py the path to the make_msa.sh command is prefaced with a "./" :
search_command = f"./{command} {fasta_file} {out_dir} {num_cpus} {ram_gb} {search_base} {template_database}"
this seems to mean jobs can only be run from the RosettaFoldAA directory (where make_msa.sh lives). We are unable to override this path in the base.yaml file because of the prepended cwd.
Can the leading ./ be removed?