baker-laboratory / RoseTTAFold-All-Atom

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small molecule conformer generation #111

Open what-is-what opened 1 month ago

what-is-what commented 1 month ago

Is it necessary for small molecules to undergo conformer generation?

When utilizing the SDF structure of a small molecule, I believe that conformer generation may not be required. Additionally, conformer generation can sometimes result in different structures, such as converting a ketone to an alcohol.

Furthermore, how can we use small molecule input as SMILES? The code seems to support the SMILES representation of small molecules.

Yang-Wang-2020 commented 3 weeks ago

Yes. smiles input works