baker-laboratory / RoseTTAFold-All-Atom

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feat: new covalent bond input syntax #112

Open YaoYinYing opened 1 month ago

YaoYinYing commented 1 month ago

Hi, this PR helps to fix covalent bond input syntax as a more friendly way.

The parser requires a input bonding string in semicolon-separated sub-string like A,74,ND2:B,1:CW,null.

For hydra CLI, additional argument should be passed like '+covale_inputs="A,74,ND2:B,1:CW,null"'.