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Error ' python -m rf2aa.run_inference --config-name protein' #132

Open Dong-HoSeo opened 5 months ago

Dong-HoSeo commented 5 months ago

I conducted 'python -m rf2aa.run_inference --config-name protein'

But, error

Traceback (most recent call last): File "/home/cbrc/mambaforge/envs/RFAA/lib/python3.10/runpy.py", line 196, in _run_module_as_main return _run_code(code, main_globals, None, File "/home/cbrc/mambaforge/envs/RFAA/lib/python3.10/runpy.py", line 86, in _run_code exec(code, run_globals) File "/home/cbrc/work/RoseTTAFold-All-Atom/rf2aa/run_inference.py", line 7, in from rf2aa.data.merge_inputs import merge_all File "/home/cbrc/work/RoseTTAFold-All-Atom/rf2aa/data/merge_inputs.py", line 4, in from rf2aa.data.data_loader_utils import merge_a3m_hetero, merge_a3m_homo, merge_hetero_templates, get_term_feats, join_msas_by_taxid, expand_multi_msa File "/home/cbrc/work/RoseTTAFold-All-Atom/rf2aa/data/data_loader_utils.py", line 14, in import networkx as nx File "/home/cbrc/.local/lib/python3.10/site-packages/networkx/init.py", line 114, in import networkx.generators File "/home/cbrc/.local/lib/python3.10/site-packages/networkx/generators/init.py", line 14, in from networkx.generators.intersection import File "/home/cbrc/.local/lib/python3.10/site-packages/networkx/generators/intersection.py", line 13, in from networkx.algorithms import bipartite File "/home/cbrc/.local/lib/python3.10/site-packages/networkx/algorithms/init.py", line 16, in from networkx.algorithms.dag import File "/home/cbrc/.local/lib/python3.10/site-packages/networkx/algorithms/dag.py", line 23, in from fractions import gcd ImportError: cannot import name 'gcd' from 'fractions' (/home/cbrc/mambaforge/envs/RFAA/lib/python3.10/fractions.py)