liudongliangHI
commented
7 months ago This seems to be just because your computer is low on memory. Perhaps you can contact your administrator to allocate you more memory.
Open PiotrP95 opened 7 months ago
liudongliangHI
commented
7 months ago This seems to be just because your computer is low on memory. Perhaps you can contact your administrator to allocate you more memory.
Hi everyone! I am new to this, with computer science and programming I don't have much experience, so I apologise if my problem is stupid or I do not give enough information. I am trying tu run RFAA on the cluster my lab is using, after using python -m rf2aa.run_inference --config-name protein I got this. Don't really know what to do. Thanks!
(RFAA) [athena][.................... RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein /net/pr2/projects/plgrid/plggmrslab/Piotr/RoseTTAFold-All-Atom/mambaforge/envs/RFAA/lib/python3.10/site-packages/hydra/_internal/defaults_list.py:251: UserWarning: In 'protein': Defaults list is missing
_self_. See https://hydra.cc/docs/1.2/upgrades/1.0_to_1.1/default_composition_order for more information warnings.warn(msg, UserWarning) Using the cif atom ordering for TRP. Error executing job with overrides: [] Traceback (most recent call last): File "/net/pr2/projects/plgrid/plggmrslab/Piotr/RoseTTAFold-All-Atom/rf2aa/run_inference.py", line 205, in main runner = ModelRunner(config) File "/net/pr2/projects/plgrid/plggmrslab/Piotr/RoseTTAFold-All-Atom/rf2aa/run_inference.py", line 28, in init read_data(config.database_params.hhdb+'_pdb.ffdata')) File "/net/pr2/projects/plgrid/plggmrslab/Piotr/RoseTTAFold-All-Atom/rf2aa/ffindex.py", line 32, in read_data data = mmap.mmap(fh.fileno(), 0, access=mmap.ACCESS_READ) OSError: [Errno 12] Cannot allocate memorySet the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.