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baker-laboratory / RoseTTAFold-All-Atom

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For protein_sm, can we have the option for RFAA to use a template protein pdb as input #53

Open cyangNYU opened 7 months ago

cyangNYU commented 7 months ago

I recently used RFAA protein_sm prediction, but it is very slow on our HPC (depend on protein size, the running time can be range from 15~90 minutes). Also, it met GPU OOMs for large protein system.

I wonder that, can we have the option for RFAA to use a template protein pdb as input for inference stage?

Xiongb-lab commented 5 months ago

same question. Can we input the protein 3D structure instead of starting from a sequence. many thanks.

aravinda1879 commented 3 months ago

I wonder if there is any update on this end.