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baker-laboratory / RoseTTAFold-All-Atom

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No module named 'hydra' #58

Open cron-weasley opened 6 months ago

cron-weasley commented 6 months ago

Dear Auth, After I finished install RoseTTAFold-All-Atom,I try to run: python -m rf2aa.run_inference --config-name protein I got an error of:

(RFAA) [chenziyang@mgmt RoseTTAFold-All-Atom-main]$ python -m rf2aa.run_inference --config-name protein Traceback (most recent call last): File "/share/home/chenziyang/.conda/envs/RFAA/lib/python3.10/runpy.py", line 196, in _run_module_as_main return _run_code(code, main_globals, None, File "/share/home/chenziyang/.conda/envs/RFAA/lib/python3.10/runpy.py", line 86, in _run_code exec(code, run_globals) File "/share/home/chenziyang/RoseTTAFold-All-Atom-main/rf2aa/run_inference.py", line 2, in import hydra ModuleNotFoundError: No module named 'hydra'

I check with pip list found that my mamba python environment only install hydra-core, then I try to install hydra-2.5 with pip install hydra, but failed.

I found that hydra-2.5 support python 3.8 and 3.9 but RoseTTAFold-All-Atom using python 3.10 installed env. Where I am wrong? And how to install hydra in RoseTTAFold-All-Atom? Thanks a lot!

amorehead commented 6 months ago

hydra-core is the dependency you need, not hydra (even though confusingly the Python module installed by hydra-core is labeled hydra). It seems your Conda environment is not properly activated, since it should be picking up on hydra from your installed copy of hydra-core.

cron-weasley commented 6 months ago

hydra-core is the dependency you need, not hydra (even though confusingly the Python module installed by hydra-core is labeled hydra). It seems your Conda environment is not properly activated, since it should be picking up on hydra from your installed copy of hydra-core.

Yes, I found the problem, It's my fault, please close my issue, Thanks!

amorehead commented 6 months ago

Hi, @cron-weasley. Great to hear your issue is resolved. I believe you'll have to close the issue, since I do not have the ability to on my end.

zehanna commented 4 months ago

Hi @cron-weasley, would you mind sharing how you fixed that error? I'm facing the same issue. Thanks a lot in advance!