This is a command line tool that does affine and/or non-linear registration by leveraging the automatic differentiation framework in PyTorch. It is automatically installed when calling setup.py and it's help is obtained by calling autoreg -h.
There is also a reslicing tool that applies affine and non-linear transformations to a file: nireslice.
This PR also has changes in the io module:
fixes
possibility to read/write freesurfer affine transforms files (.lta)
refactoring so that volumes and transforms have their own subfolders (everything is still imported into the base io module by default so it should not break anything)
This is a command line tool that does affine and/or non-linear registration by leveraging the automatic differentiation framework in PyTorch. It is automatically installed when calling
setup.pyand it's help is obtained by callingautoreg -h.There is also a reslicing tool that applies affine and non-linear transformations to a file:
nireslice.This PR also has changes in the
iomodule:iomodule by default so it should not break anything)