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balbasty / spm_mni_align

SPM toolbox to align an image to SPM's template space
GNU General Public License v3.0
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eSPM #1

Open HaotingWu opened 2 years ago

HaotingWu commented 2 years ago

Thanks for your great work.
I've used this toolbox to normalize T1 images, but it failed and the code indicated that "eTPM.nii" does not exist. In the subfolder of spm12, I only find TPM.nii, not eTPM.nii. Are these two images the same, and if not, how can I solve this problem? In addition, I would like to ask if this toolbox can handle other image types as well? Like FLAIR, or DTI images? I look forward to your response!

balbasty commented 2 years ago

Hi @HaotingWu

Sorry, I am just seeing this. It's weird, the toolbox is supposed to use TPM.nii, not eTPM.nii. Any chance you can share the precise error message?

The toolbox should work with any contrast. However, be aware that it's only performing an affine MNI normalization (not a nonlinear one).

Cheers Yael