balicea / DevoWorm

Code for DevoWorm project
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Resolve un-parented cell entries in differentiation tree spreadsheet #75

Closed mwatts15 closed 7 years ago

mwatts15 commented 8 years ago

In working with this file, I found a few cell entries, other than P0, that are without a parent. These should be resolved such that each mother-daughter link is represented without relying on implicit relationships or on external data sources.

ABprapp MSpap ABarpaaaa ABarpaaap ABarapapaa ABplppapaa ABpraaapp ABprpapap

mwatts15 commented 8 years ago

@balicea is there an earlier data source that the spreadsheet comes from? Some notes, maybe?

balicea commented 8 years ago

Mark,

Here are the data for the cells you listed (from a different master file). Order of numberic values should be x,y,z (as in the file you are working with): ABprapp 459.6128062 273.7570302 15.13553026 MSpap 371.5199311 239.5351075 14.56264573 ABarpaaaa 230.9854344 259.7703629 15.88516009 ABarpaaap 258.3792251 261.6409993 15.8850886 ABarapapaa 289.5874098 258.0181299 14.22876545 ABplppapaa 359.7292533 226.0404918 14.95520446 ABpraaapp 310.2375163 278.1830907 15.08115306 ABprpapap 374.3496029 268.7215373 14.57011324

mwatts15 commented 8 years ago

Thanks, Bradly. The problem I have is more that there's no indication if the cells without parents are the larger or smaller daughter cell or if they lack a sibling.

balicea commented 8 years ago

Here is the larger/smaller indication for this list of cells, with the rows representing cell in list, is cell in list larger or smaller?, sister cell ID: ABprapp Smaller ABprapa MSpap Larger MSpaa ABarpaaaa Larger ABarpaaap ABarpaaap Smaller ABarpaaaa ABarapapaa Smaller ABarapapap ABplppapaa Smaller ABplppapap ABpraaapp Larger ABpraaapa ABprpapap Larger ABprpappaa