baliga-lab / GGBWeb

Integrative, web-based genome browser based on the Gaggle Genome Browser
MIT License
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#6 - Search thru gene annotation [to implement] #37

Open dsalvanha opened 9 years ago

dsalvanha commented 9 years ago

Once we create a new data set (from menu file), we store annotation (genbank) and fasta file here:

GGB_ORGANISM_INFO[GGB_CURRENT_DATASET][ELEMENT_YOU_WANT].genbank

User should be able to search for ALL elements (e.g. all chrs, plasmids of the current dataset);

The result should be presented as a minimalistic table of 6 columsn Checkbox / Name / Comum Name / Start / End / Show

Checkbox column--> on each query result helps the user to ADD multiple elements to a module (either existent module or to create a new one with the new selected elements).

Show --> icon to open GGBWindow button should be available (i.e., I query GeneNameXX, I get 2 genes as results - I can imediately open the GGBWindow on those genes (the eye icon)

dsalvanha commented 9 years ago

Moreover:

we have two different searchs. The main one (Main Panel) that user can use it's results to open a GGBWindow OR create/import a location to a module.

A secondary Search on the GGBWindow (text field) where the query result will be to center the window to the new gene posisitons