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baliga-lab / cmonkey2

Python port of cMonkey, a machine-learning based method for clustering
GNU Lesser General Public License v3.0
26 stars 16 forks source link

executable paths #55

Closed adelomana closed 8 years ago

adelomana commented 8 years ago

On my machine some executable are in a different path, it might be a good idea to add /usr/bin as a possible path for uname and awk

Gates 2016-08-15 10:48:00 ~/gDrive2/projects/TREES-C/PfuEGRIN/src/cmonkeyRuns : ./command.sh 2016-08-15 10:49:30 INFO checking MEME... /bin/uname: Command not found. /bin/awk: Command not found. 2016-08-15 10:49:30 INFO Input matrix has # rows: 3, # columns: 3 2016-08-15 10:49:30 INFO # clusters/row: 2

Gates 2016-08-15 10:54:45 ~/projects/green/data/input4cmonkey : ls /usr/bin/awk /usr/bin/awk Gates 2016-08-15 14:10:14 ~/projects/green/data/input4cmonkey : ls /usr/bin/uname /usr/bin/uname Gates 2016-08-15 14:10:19 ~/projects/green/data/input4cmonkey :

weiju commented 8 years ago

these error messages come from the meme script, cmonkey2 itself does not have as many shell tool dependencies.

adelomana commented 8 years ago

thanks Wei-Ju!