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baliga-lab / network_portal

A web-app for archiving and exploring gene-regulatory networks.
networks.systemsbiology.net
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Missing Network and expression files #15

Open sturkarslan opened 11 years ago

sturkarslan commented 11 years ago

We currently do not have network file for "eco" and do not have expression ".tsv" file for "dvu", "mmp", "eco", "hal" and "syf"

sturkarslan commented 11 years ago

expression data link: http://poland:8000/static/data/Expression/0/gsu-ratios.tsv network data link: http://poland:8000/static/data/Network/0/gsu-network.cys

weiju commented 11 years ago

I talked with Ning about this - we place expression data for each species under

/static/data//Expression/0

and network data under

/static/data//Network/0

The 0 stands for the generic user and is available for everyone

weiju commented 11 years ago

bce, bsu, bth, cac, cje and gsu are now available

weiju commented 11 years ago

pae as well, i should add, these are the gene expressions

weiju commented 11 years ago

added dvu and eco

weiju commented 11 years ago

rsp and hal expressions added

sturkarslan commented 11 years ago

There is no /static/data/Expression/0

This is actually at /local/nwportaluserdata/eco/Expression/0. That is why expression data/cytoscape data in the species page or workspace page seems to be broken. How should we link to /local/nwportaluserdata/eco/Expression/0 ?

weiju commented 11 years ago

That doesn't work since it is not controlled by Apache server. You could serve it by Django, but it's not recommended. All such data should go below /local/apache-stuff/nwportal