search

ban-m / jtk

JTK -- a regional diploid genome assembler
MIT License
23 stars 2 forks source link

GFA2 visualization #6

Closed snurk closed 2 weeks ago

snurk commented 1 year ago

Thanks for the exciting new development! Any recommendations on visualizing the answer? Or maybe producing a GFA1 output as an option?

ban-m commented 1 year ago

Thanks! I use GfaViz (https://github.com/ggonnella/gfaviz) for vizualization. It is very easy to install and use. There is a program to convert a GFA2 file into the GFA1 format (https://github.com/edawson/gfakluge), but I have not tested yet.