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baoxingsong / AnchorWave

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
MIT License
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Merge and genotype gvcf from AnchorWave #51

Closed baozg closed 1 year ago

baozg commented 1 year ago

Hi, @baoxingsong

How do we merge gVCF from MAFToGVCFPlugin from TASSEL? I already see your post in GATK https://github.com/broadinstitute/gatk/issues/7976. Did you have any recommendations for downstream work?

baoxingsong commented 1 year ago

Please try this one https://github.com/baoxingsong/AnchorWave/blob/master/doc/GATK.md

baozg commented 1 year ago

Thanks a lot! I will try it.