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baoxingsong / AnchorWave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
MIT License
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Can AnchorWave be used for calculating identities of pairwise alignments in whole genome comparisons? #65

Open cjchen5 opened 5 months ago

cjchen5 commented 5 months ago

Dear AnchorWave team,

I am currently working on a project that involves calculating identities of 1M window size pairwise alignments in whole genome comparisons. I understand that AnchorWave is designed for sensitive alignment of genomes with high sequence diversity and extensive structural polymorphism. I am wondering if AnchorWave could be used to assist in my project. Specifically, can it help me calculate identities of 1M window size pairwise alignments in whole genome comparisons?

Thank you for your time and assistance!

baoxingsong commented 5 months ago

Yes, it can be used for that aim.

---- Replied Message ---- | From | chujia @.> | | Date | 02/09/2024 03:06 | | To | baoxingsong/AnchorWave @.> | | Cc | Subscribed @.***> | | Subject | [baoxingsong/AnchorWave] Can AnchorWave be used for calculating identities of pairwise alignments in whole genome comparisons? (Issue #65) |

Dear AnchorWave team,

I am currently working on a project that involves calculating identities of 1M window size pairwise alignments in whole genome comparisons. I understand that AnchorWave is designed for sensitive alignment of genomes with high sequence diversity and extensive structural polymorphism. I am wondering if AnchorWave could be used to assist in my project. Specifically, can it help me calculate identities of 1M window size pairwise alignments in whole genome comparisons?

Thank you for your time and assistance!

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