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baoxingsong / AnchorWave

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
MIT License
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MAF FORMAT #73

Open Zhaoqiyue5 opened 3 months ago

Zhaoqiyue5 commented 3 months ago

Hi, Dr. Song I have an issue where I couldn't directly generate the VCF format using -IV. Therefore, I generated the data in MAF format. How can I extract inversion information from the MAF format, or is there a way to convert the MAF format to another format?

baoxingsong commented 3 months ago

Please refer this document https://github.com/baoxingsong/AnchorWave/blob/master/doc/GATK.md